Detailed information of SNP:
|
SNP ID:
sf0403558698(Gbrowse)
Chromosome: chr04 Position: 3558698 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.88% | 19.12% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 495 | 53.13% | 46.87% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 334 | 44.61% | 55.39% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403558698 | T->C | INTERGENIC | None |