Detailed information of SNP:
|
SNP ID:
sf0403561243(Gbrowse)
Chromosome: chr04 Position: 3561243 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 57.62% | 42.38% |
| All Indica | 778 | 85.48% | 14.52% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 200 | 78.50% | 21.50% |
| Indica Intermediate | 205 | 69.27% | 30.73% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403561243 | A->G | LOC_Os04g06780(LOC_Os04g06780.1) | Synonymous |