Detailed information of SNP:
|
SNP ID:
sf0403561975(Gbrowse)
Chromosome: chr04 Position: 3561975 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.22% | 37.78% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 495 | 10.10% | 89.90% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403561975 | G->A | INTERGENIC | None |