Detailed information of SNP:
|
SNP ID:
sf0403569330(Gbrowse)
Chromosome: chr04 Position: 3569330 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 73.68% | 26.32% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 496 | 36.09% | 63.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 334 | 36.23% | 63.77% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403569330 | C->A | INTERGENIC | None |