Detailed information of SNP:
|
SNP ID:
sf0403574744(Gbrowse)
Chromosome: chr04 Position: 3574744 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 74.63% | 25.37% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403574744 | T->A | LOC_Os04g06790(LOC_Os04g06790.1) | UTR_5_PRIME |
| sf0403574744 | T->A | LOC_Os04g06790(LOC_Os04g06790.3) | INTRON |
| sf0403574744 | T->A | LOC_Os04g06790(LOC_Os04g06790.2) | INTRON |