Detailed information of SNP:
|
SNP ID:
sf0403581862(Gbrowse)
Chromosome: chr04 Position: 3581862 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 85.30% | 14.70% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 420 | 65.95% | 34.05% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 266 | 54.89% | 45.11% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 62 | 69.35% | 30.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403581862 | A->G | INTERGENIC | None |