Detailed information of SNP:
|
SNP ID:
sf0403589975(Gbrowse)
Chromosome: chr04 Position: 3589975 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 82.83% | 17.17% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 496 | 61.29% | 38.71% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 68.56% | 31.44% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403589975 | A->G | LOC_Os04g06820(LOC_Os04g06820.1) | INTRON |