Detailed information of SNP:
|
SNP ID:
sf0403644173(Gbrowse)
Chromosome: chr04 Position: 3644173 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 53.87% | 46.13% |
| All Indica | 775 | 85.81% | 14.19% |
| All Japonica | 496 | 10.69% | 89.31% |
| Aus | 59 | 13.56% | 86.44% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 197 | 75.13% | 24.87% |
| Indica Intermediate | 203 | 78.82% | 21.18% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403644173 | G->A | LOC_Os04g06910(LOC_Os04g06910.1) | Synonymous |