Detailed information of SNP:
|
SNP ID:
sf0403651862(Gbrowse)
Chromosome: chr04 Position: 3651862 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.43% | 11.57% |
| All Indica | 797 | 91.34% | 8.66% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403651862 | G->A | LOC_Os04g06920(LOC_Os04g06920.1) | INTRON |