Detailed information of SNP:
|
SNP ID:
sf0403654484(Gbrowse)
Chromosome: chr04 Position: 3654484 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 60.26% | 39.74% |
| All Indica | 796 | 71.48% | 28.52% |
| All Japonica | 492 | 45.73% | 54.27% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 209 | 47.37% | 52.63% |
| Temperate Japonica | 334 | 56.89% | 43.11% |
| Tropical Japonica | 90 | 15.56% | 84.44% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403654484 | C->T | INTERGENIC | None |