Detailed information of SNP:
|
SNP ID:
sf0403655881(Gbrowse)
Chromosome: chr04 Position: 3655881 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 54.87% | 45.13% |
| All Indica | 794 | 70.78% | 29.22% |
| All Japonica | 483 | 33.13% | 66.87% |
| Aus | 52 | 36.54% | 63.46% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 211 | 54.03% | 45.97% |
| Indica Intermediate | 209 | 45.93% | 54.07% |
| Temperate Japonica | 323 | 44.27% | 55.73% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403655881 | G->A | INTERGENIC | None |