Detailed information of SNP:
|
SNP ID:
sf0403663869(Gbrowse)
Chromosome: chr04 Position: 3663869 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 89.31% | 10.69% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 492 | 73.58% | 26.42% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 331 | 67.07% | 32.93% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403663869 | A->G | LOC_Os04g06960(LOC_Os04g06960.1) | Non-Synonymous SNP |