Detailed information of SNP:
|
SNP ID:
sf0403664354(Gbrowse)
Chromosome: chr04 Position: 3664354 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 92.50% | 7.50% |
| All Indica | 747 | 90.36% | 9.64% |
| All Japonica | 482 | 99.38% | 0.62% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 366 | 99.45% | 0.55% |
| Indica II | 198 | 72.73% | 27.27% |
| Indica Intermediate | 183 | 91.26% | 8.74% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 96.30% | 3.70% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403664354 | G->A | LOC_Os04g06960(LOC_Os04g06960.1) | Synonymous |