Detailed information of SNP:
|
SNP ID:
sf0403666025(Gbrowse)
Chromosome: chr04 Position: 3666025 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 86.52% | 13.48% |
| All Indica | 767 | 84.35% | 15.65% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 199 | 65.83% | 34.17% |
| Indica Intermediate | 194 | 80.93% | 19.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403666025 | C->G | LOC_Os04g06960(LOC_Os04g06960.1) | Non-Synonymous SNP |