Detailed information of SNP:
|
SNP ID:
sf0403666439(Gbrowse)
Chromosome: chr04 Position: 3666439 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 75.00% | 25.00% |
| All Indica | 725 | 54.48% | 45.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 29.28% | 70.72% |
| Indica II | 201 | 70.65% | 29.35% |
| Indica Intermediate | 203 | 78.33% | 21.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403666439 | G->A | INTERGENIC | None |