Detailed information of SNP:
|
SNP ID:
sf0403705287(Gbrowse)
Chromosome: chr04 Position: 3705287 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 59.80% | 40.20% |
| All Indica | 789 | 33.33% | 66.67% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 3.54% | 96.46% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403705287 | T->C | INTERGENIC | None |