Detailed information of SNP:
|
SNP ID:
sf0403723861(Gbrowse)
Chromosome: chr04 Position: 3723861 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 97.86% | 2.14% |
| All Indica | 787 | 96.82% | 3.18% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 97.29% | 2.71% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403723861 | A->T | LOC_Os04g07030(LOC_Os04g07030.1) | Non-Synonymous SNP |