Detailed information of SNP:
|
SNP ID:
sf0403723960(Gbrowse)
Chromosome: chr04 Position: 3723960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 95.81% | 4.19% |
| All Indica | 769 | 92.72% | 7.28% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 356 | 91.57% | 8.43% |
| Indica II | 204 | 94.61% | 5.39% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403723960 | G->A | LOC_Os04g07030(LOC_Os04g07030.1) | Non-Synonymous SNP |