Detailed information of SNP:
|
SNP ID:
sf0403733630(Gbrowse)
Chromosome: chr04 Position: 3733630 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1297 | 88.05% | 11.95% |
| All Indica | 776 | 95.88% | 4.12% |
| All Japonica | 399 | 70.93% | 29.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 193 | 93.26% | 6.74% |
| Temperate Japonica | 265 | 81.51% | 18.49% |
| Tropical Japonica | 86 | 43.02% | 56.98% |
| Japonica Intermediate | 48 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403733630 | T->C | LOC_Os04g07010(LOC_Os04g07010.1) | Synonymous |