Detailed information of SNP:



SNP ID: sf0403765294(Gbrowse)

Chromosome: chr04

Position: 3765294
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 97.74% 2.26%
All Indica799 99.50% 0.50%
All Japonica495 94.75% 5.25%
Aus66 98.48% 1.52%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica333 94.59% 5.41%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0403765294 T->C INTERGENIC None