Detailed information of SNP:



SNP ID: sf0403774592(Gbrowse)

Chromosome: chr04

Position: 3774592
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 98.87% 1.13%
All Indica799 99.62% 0.38%
All Japonica496 97.58% 2.42%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 99.10% 0.90%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0403774592 C->T INTERGENIC None