Detailed information of SNP:
SNP ID:
sf0403774592(Gbrowse)
Chromosome: chr04 Position: 3774592 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 98.87% | 1.13% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 496 | 97.58% | 2.42% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 334 | 99.10% | 0.90% |
Tropical Japonica | 94 | 96.81% | 3.19% |
Japonica Intermediate | 68 | 91.18% | 8.82% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0403774592 | C->T | INTERGENIC | None |