Detailed information of SNP:
|
SNP ID:
sf0403775795(Gbrowse)
Chromosome: chr04 Position: 3775795 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 51.75% | 48.25% |
| All Indica | 788 | 60.66% | 39.34% |
| All Japonica | 490 | 37.96% | 62.04% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 369 | 82.11% | 17.89% |
| Indica II | 211 | 49.29% | 50.71% |
| Indica Intermediate | 208 | 34.13% | 65.87% |
| Temperate Japonica | 334 | 34.73% | 65.27% |
| Tropical Japonica | 90 | 44.44% | 55.56% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403775795 | G->C | INTERGENIC | None |