Detailed information of SNP:
|
SNP ID:
sf0403775850(Gbrowse)
Chromosome: chr04 Position: 3775850 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 86.67% | 13.33% |
| All Indica | 794 | 97.86% | 2.14% |
| All Japonica | 490 | 73.67% | 26.33% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 332 | 69.88% | 30.12% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 66 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403775850 | T->C | INTERGENIC | None |