Detailed information of SNP:
|
SNP ID:
sf0403813669(Gbrowse)
Chromosome: chr04 Position: 3813669 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.87% | 27.13% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403813669 | C->A | LOC_Os04g07190(LOC_Os04g07190.1) | Non-Synonymous SNP |