Detailed information of SNP:
|
SNP ID:
sf0403831293(Gbrowse)
Chromosome: chr04 Position: 3831293 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.50% | 22.50% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 496 | 47.38% | 52.62% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403831293 | T->A | INTERGENIC | None |