Detailed information of SNP:
|
SNP ID:
sf0403836047(Gbrowse)
Chromosome: chr04 Position: 3836047 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.36% | 8.64% |
| All Indica | 793 | 85.50% | 14.50% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 207 | 63.29% | 36.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403836047 | C->A | INTERGENIC | None |