Detailed information of SNP:
|
SNP ID:
sf0403917884(Gbrowse)
Chromosome: chr04 Position: 3917884 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.02% | 2.98% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 93.53% | 6.47% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403917884 | G->A | LOC_Os04g07370(LOC_Os04g07370.1) | Synonymous |