Detailed information of SNP:
|
SNP ID:
sf0403918334(Gbrowse)
Chromosome: chr04 Position: 3918334 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 97.87% | 2.13% |
| All Indica | 791 | 97.98% | 2.02% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403918334 | G->A | LOC_Os04g07370(LOC_Os04g07370.1) | Synonymous |