Detailed information of SNP:
|
SNP ID:
sf0403918361(Gbrowse)
Chromosome: chr04 Position: 3918361 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.45% | 2.55% |
| All Indica | 792 | 97.60% | 2.40% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403918361 | G->A | LOC_Os04g07370(LOC_Os04g07370.1) | Synonymous |