Detailed information of SNP:
|
SNP ID:
sf0403933657(Gbrowse)
Chromosome: chr04 Position: 3933657 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 57.86% | 42.14% |
| All Indica | 785 | 90.45% | 9.55% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 205 | 82.44% | 17.56% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403933657 | G->A | LOC_Os04g07390(LOC_Os04g07390.1) | Non-Synonymous SNP |