Detailed information of SNP:
|
SNP ID:
sf0403996070(Gbrowse)
Chromosome: chr04 Position: 3996070 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 71.61% | 28.39% |
| All Indica | 785 | 88.41% | 11.59% |
| All Japonica | 495 | 51.92% | 48.08% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 207 | 71.50% | 28.50% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403996070 | C->T | LOC_Os04g07510(LOC_Os04g07510.1) | Synonymous |