Detailed information of SNP:
|
SNP ID:
sf0404012366(Gbrowse)
Chromosome: chr04 Position: 4012366 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1300 | 94.92% | 5.08% |
| All Indica | 683 | 91.95% | 8.05% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 316 | 94.94% | 5.06% |
| Indica II | 181 | 92.27% | 7.73% |
| Indica Intermediate | 186 | 86.56% | 13.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404012366 | T->A | INTERGENIC | None |