Detailed information of SNP:
|
SNP ID:
sf0404013411(Gbrowse)
Chromosome: chr04 Position: 4013411 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 83.85% | 16.15% |
| All Indica | 774 | 71.71% | 28.29% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 75.00% | 25.00% |
| Indica II | 205 | 71.22% | 28.78% |
| Indica Intermediate | 201 | 66.17% | 33.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404013411 | A->C | INTERGENIC | None |