Detailed information of SNP:
|
SNP ID:
sf0404016044(Gbrowse)
Chromosome: chr04 Position: 4016044 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 92.27% | 7.73% |
| All Indica | 783 | 86.46% | 13.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 362 | 89.78% | 10.22% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404016044 | A->C | INTERGENIC | None |