Detailed information of SNP:
|
SNP ID:
sf0404016439(Gbrowse)
Chromosome: chr04 Position: 4016439 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 90.82% | 9.18% |
| All Indica | 787 | 95.68% | 4.32% |
| All Japonica | 495 | 82.02% | 17.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 96.48% | 3.52% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404016439 | A->G | LOC_Os04g07560(LOC_Os04g07560.1) | Synonymous |