Detailed information of SNP:
|
SNP ID:
sf0404022931(Gbrowse)
Chromosome: chr04 Position: 4022931 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 62.25% | 37.75% |
| All Indica | 760 | 41.45% | 58.55% |
| All Japonica | 494 | 98.18% | 1.82% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 350 | 49.14% | 50.86% |
| Indica II | 206 | 37.86% | 62.14% |
| Indica Intermediate | 204 | 31.86% | 68.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404022931 | G->A | INTERGENIC | None |