Detailed information of SNP:
|
SNP ID:
sf0404043614(Gbrowse)
Chromosome: chr04 Position: 4043614 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 78.88% | 21.12% |
| All Indica | 798 | 74.06% | 25.94% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404043614 | A->G | INTERGENIC | None |