Detailed information of SNP:
|
SNP ID:
sf0404081295(Gbrowse)
Chromosome: chr04 Position: 4081295 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 97.17% | 2.83% |
| All Indica | 793 | 95.21% | 4.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404081295 | G->T | LOC_Os04g07670(LOC_Os04g07670.1) | Non-Synonymous SNP |