Detailed information of SNP:
|
SNP ID:
sf0404081839(Gbrowse)
Chromosome: chr04 Position: 4081839 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 75.67% | 24.33% |
| All Indica | 794 | 90.05% | 9.95% |
| All Japonica | 497 | 49.30% | 50.70% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 371 | 87.87% | 12.13% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 33.43% | 66.57% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404081839 | C->T | LOC_Os04g07670(LOC_Os04g07670.1) | Synonymous |