Detailed information of SNP:
|
SNP ID:
sf0404154870(Gbrowse)
Chromosome: chr04 Position: 4154870 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1156 | 77.16% | 22.84% |
| All Indica | 767 | 94.26% | 5.74% |
| All Japonica | 294 | 30.95% | 69.05% |
| Aus | 51 | 96.08% | 3.92% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 187 | 90.91% | 9.09% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 152 | 29.61% | 70.39% |
| Tropical Japonica | 91 | 38.46% | 61.54% |
| Japonica Intermediate | 51 | 21.57% | 78.43% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404154870 | C->T | LOC_Os04g07770(LOC_Os04g07770.1) | INTRON |