Detailed information of SNP:
|
SNP ID:
sf0404242970(Gbrowse)
Chromosome: chr04 Position: 4242970 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 95.41% | 4.59% |
| All Indica | 756 | 91.80% | 8.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 194 | 94.33% | 5.67% |
| Indica Intermediate | 190 | 93.68% | 6.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404242970 | C->A | LOC_Os04g07980(LOC_Os04g07980.1) | INTRON |