Detailed information of SNP:
|
SNP ID:
sf0404251903(Gbrowse)
Chromosome: chr04 Position: 4251903 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.65% | 31.35% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404251903 | A->T | INTERGENIC | None |