Detailed information of SNP:
|
SNP ID:
sf0404259448(Gbrowse)
Chromosome: chr04 Position: 4259448 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 89.84% | 10.16% |
| All Indica | 797 | 86.32% | 13.68% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404259448 | A->G | LOC_Os04g08000(LOC_Os04g08000.1) | Non-Synonymous SNP |