Detailed information of SNP:
|
SNP ID:
sf0404287606(Gbrowse)
Chromosome: chr04 Position: 4287606 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 91.79% | 8.21% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 444 | 75.68% | 24.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 292 | 66.78% | 33.22% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 59 | 83.05% | 16.95% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404287606 | A->G | INTERGENIC | None |