Detailed information of SNP:
|
SNP ID:
sf0404297216(Gbrowse)
Chromosome: chr04 Position: 4297216 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 83.17% | 16.83% |
| All Indica | 790 | 85.82% | 14.18% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 205 | 79.51% | 20.49% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404297216 | C->T | INTERGENIC | None |