Detailed information of SNP:
|
SNP ID:
sf0404298596(Gbrowse)
Chromosome: chr04 Position: 4298596 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 95.50% | 4.50% |
| All Indica | 791 | 96.97% | 3.03% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 57 | 89.47% | 10.53% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404298596 | C->T | INTERGENIC | None |