Detailed information of SNP:
|
SNP ID:
sf0404299135(Gbrowse)
Chromosome: chr04 Position: 4299135 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 60.71% | 39.29% |
| All Indica | 796 | 39.57% | 60.43% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 7.22% | 92.78% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404299135 | G->A | INTERGENIC | None |