Detailed information of SNP:
|
SNP ID:
sf0404305010(Gbrowse)
Chromosome: chr04 Position: 4305010 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.45% | 29.55% |
| All Indica | 798 | 83.83% | 16.17% |
| All Japonica | 497 | 46.68% | 53.32% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 51.64% | 48.36% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404305010 | C->T | LOC_Os04g08070(LOC_Os04g08070.1) | Non-Synonymous SNP |