Detailed information of SNP:
|
SNP ID:
sf0404306639(Gbrowse)
Chromosome: chr04 Position: 4306639 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.04% | 30.96% |
| All Indica | 799 | 83.73% | 16.27% |
| All Japonica | 496 | 43.95% | 56.05% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 51.04% | 48.96% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404306639 | C->T | INTERGENIC | None |