Detailed information of SNP:
|
SNP ID:
sf0404309336(Gbrowse)
Chromosome: chr04 Position: 4309336 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.11% | 30.89% |
| All Indica | 799 | 83.23% | 16.77% |
| All Japonica | 497 | 44.87% | 55.13% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404309336 | C->A | INTERGENIC | None |